PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452874.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 581aa    MW: 61523.2 Da    PI: 9.2723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.9e-08205249144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed  l+ av++ G g+W+ I +      Rt+ q+  rw
   XP_016452874.1 205 RKPWSAAEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 249
                      789************************984222488888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.723200257IPR017930Myb domain
SuperFamilySSF466892.94E-12201254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-13201254IPR009057Homeodomain-like
SMARTSM007172.8E-8204255IPR001005SANT/Myb domain
PfamPF002492.1E-6205249IPR001005SANT/Myb domain
CDDcd116603.13E-14206254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MVEKRKLQKR VFIGEDDVSS LLQRYTAMTV LTVLQEVSQV QDVKIDWNEL VKKTTTGITN  60
AREYQMLWRH LAYHHGLLDK FDDDSAQPLD DDSDLEYELE AFPPVSSEAS AEATAYVKVL  120
IASGVPCDSH MSNGNTIEAP LTISIPNGQT SGTATENSLH GISAYGTKIT VPVSVEKQPL  180
TSVTAAEVVD TNGPANSNFP PRRRRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWA IIRKRHGNMV GNGSQLSEAQ LAARHAMSLA LGDNLRAACP ISTNVGPNSG  300
SAPSNSLHFA AANNASGGPK SEHQQDLVPS KPRVIPKNPL PKPAINPDSM VKTAAMAAGS  360
RIATPSGAAA SLQKAAESKK VVQIMPGGTP AVKSSVPGST NGLPSNVHFI RTGLVSRPPG  420
CGPSNASQSA VRPNPMAVPS RTNVSSGVPA GPTSSSARVL EAKTKAVATQ EIPAAILSNA  480
RREKVEIDQA ASMENAQQQV RKGQTFGSGN LLTEKVEGQT SILGHTVKEQ GGESKASRVL  540
VQEKLIPSVE TVSNNSIRNQ GENSNKNENT KIVLALESSG V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452874.10.0PREDICTED: uncharacterized protein LOC107777378
TrEMBLK4BU740.0K4BU74_SOLLC; Uncharacterized protein
STRINGSolyc04g076360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-77MYB_related family protein